comic-hasher/sqlite.go
Timmy Welch 0928ed6ccf Optimize memory usage
Add a basic map storage that does manual searches to conserve memory
Change saved hashes format to allow multiple hashes for a given ID
Add a vptree storage

Maps in Go take up a huge amount of space changing IDList to []ID took
  memory from over 1GB down to 200MB (note this was on aarch64 MacOS
  which for some reason uses less memory than aarch64 Linux).
  Exhaustive searches using slices took about 30 ms search now takes
  50-60 ms as it takes longer to iterate a map. Partial hashes will
  speed up searches to 8 ms at the cost of 700MB initial memory usage
  and 400MB idle (though this is on MacOS, which for some reason uses
  less memory that aarch64 Linux so probably more like
  900MB initial -> 600 MB idle on an RPI running Linux)
2024-09-07 14:51:18 -07:00

466 lines
12 KiB
Go

package ch
import (
"context"
"database/sql"
"errors"
"fmt"
"log"
"math/bits"
"strings"
"time"
"gitea.narnian.us/lordwelch/goimagehash"
_ "modernc.org/sqlite"
)
type sqliteStorage struct {
db *sql.DB
}
type sqliteHash struct {
hashid int
Result
}
func (s *sqliteStorage) findExactHashes(statement *sql.Stmt, items ...interface{}) ([]sqliteHash, error) { // exact matches are also found by partial matches. Don't bother with exact matches so we don't have to de-duplicate
hashes := []sqliteHash{}
rows, err := statement.Query(items...)
if err != nil {
return hashes, err
}
for rows.Next() {
var (
r = sqliteHash{Result: Result{IDs: make(IDList)}}
h int64
)
err = rows.Scan(&r.hashid, &h, &r.Hash.Kind)
if err != nil {
rows.Close()
return hashes, err
}
r.Hash.Hash = uint64(h)
hashes = append(hashes, r)
}
rows.Close()
statement, err = s.db.PrepareContext(context.Background(), `SELECT IDS.domain, IDs.id FROM IDs JOIN id_hash ON IDs.rowid = id_hash.idid WHERE (id_hash.hashid=?) ORDER BY IDs.domain, IDs.ID;`)
if err != nil {
return hashes, err
}
for _, hash := range hashes {
rows, err := statement.Query(hash.hashid)
if err != nil {
return hashes, err
}
for rows.Next() {
var source Source
var id string
err := rows.Scan(&source, &id)
if err != nil {
return hashes, err
}
hash.IDs[source] = append(hash.IDs[source], id)
}
rows.Close()
}
return hashes, nil
}
func (s *sqliteStorage) findPartialHashes(max int, search_hash int64, kind goimagehash.Kind) ([]sqliteHash, error) { // exact matches are also found by partial matches. Don't bother with exact matches so we don't have to de-duplicate
hashes := []sqliteHash{}
statement, err := s.db.PrepareContext(context.Background(), `SELECT rowid,hash,kind FROM Hashes WHERE (kind=?) AND (((hash >> (0 * 8) & 0xFF)=(?2 >> (0 * 8) & 0xFF)) OR ((hash >> (1 * 8) & 0xFF)=(?2 >> (1 * 8) & 0xFF)) OR ((hash >> (2 * 8) & 0xFF)=(?2 >> (2 * 8) & 0xFF)) OR ((hash >> (3 * 8) & 0xFF)=(?2 >> (3 * 8) & 0xFF)) OR ((hash >> (4 * 8) & 0xFF)=(?2 >> (4 * 8) & 0xFF)) OR ((hash >> (5 * 8) & 0xFF)=(?2 >> (5 * 8) & 0xFF)) OR ((hash >> (6 * 8) & 0xFF)=(?2 >> (6 * 8) & 0xFF)) OR ((hash >> (7 * 8) & 0xFF)=(?2 >> (7 * 8) & 0xFF)));`)
if err != nil {
return hashes, err
}
rows, err := statement.Query(kind, int64(search_hash))
if err != nil {
return hashes, err
}
for rows.Next() {
var (
r = sqliteHash{Result: Result{IDs: make(IDList)}}
h int64
)
err = rows.Scan(&r.hashid, &h, &r.Hash.Kind)
if err != nil {
rows.Close()
return hashes, err
}
r.Hash.Hash = uint64(h)
r.Distance = bits.OnesCount64(uint64(search_hash) ^ r.Hash.Hash)
if r.Distance <= max {
hashes = append(hashes, r)
}
}
rows.Close()
logTime("Filter partial " + kind.String())
statement, err = s.db.PrepareContext(context.Background(), `SELECT DISTINCT IDS.domain, IDs.id, id_hash.hashid FROM IDs JOIN id_hash ON IDs.rowid = id_hash.idid WHERE (id_hash.hashid in (`+strings.TrimRight(strings.Repeat("?,", len(hashes)), ",")+`)) ORDER BY IDs.domain, IDs.ID;`)
if err != nil {
return hashes, err
}
var ids []any
for _, hash := range hashes {
ids = append(ids, hash.hashid)
}
rows, err = statement.Query(ids...)
if err != nil {
return hashes, err
}
for rows.Next() {
var source Source
var id string
var hashid int
err := rows.Scan(&source, &id, &hashid)
if err != nil {
return hashes, err
}
for _, hash := range hashes {
if hash.hashid == hashid {
hash.IDs[source] = append(hash.IDs[source], id)
}
}
}
rows.Close()
return hashes, nil
}
func (s *sqliteStorage) dropIndexes() error {
_, err := s.db.Exec(`
DROP INDEX IF EXISTS hash_index;
DROP INDEX IF EXISTS hash_1_index;
DROP INDEX IF EXISTS hash_2_index;
DROP INDEX IF EXISTS hash_3_index;
DROP INDEX IF EXISTS hash_4_index;
DROP INDEX IF EXISTS hash_5_index;
DROP INDEX IF EXISTS hash_6_index;
DROP INDEX IF EXISTS hash_7_index;
DROP INDEX IF EXISTS hash_8_index;
DROP INDEX IF EXISTS id_domain;
`)
if err != nil {
return err
}
return nil
}
func (s *sqliteStorage) createIndexes() error {
_, err := s.db.Exec(`
CREATE INDEX IF NOT EXISTS hash_index ON Hashes (kind, hash);
CREATE INDEX IF NOT EXISTS hash_1_index ON Hashes ((hash >> (0 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS hash_2_index ON Hashes ((hash >> (1 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS hash_3_index ON Hashes ((hash >> (2 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS hash_4_index ON Hashes ((hash >> (3 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS hash_5_index ON Hashes ((hash >> (4 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS hash_6_index ON Hashes ((hash >> (5 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS hash_7_index ON Hashes ((hash >> (6 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS hash_8_index ON Hashes ((hash >> (7 * 8) & 0xFF));
CREATE INDEX IF NOT EXISTS id_domain ON IDs (domain, id);
PRAGMA shrink_memory;
ANALYZE;
`)
if err != nil {
return err
}
return nil
}
var (
total time.Duration
t = time.Now()
)
func resetTime() {
total = 0
t = time.Now()
}
func logTime(log string) {
n := time.Now()
s := n.Sub(t)
t = n
total += s
fmt.Printf("total: %v, %s: %v\n", total, log, s)
}
func (s *sqliteStorage) GetMatches(hashes []Hash, max int, exactOnly bool) ([]Result, error) {
var (
foundMatches []Result
)
resetTime()
if exactOnly { // exact matches are also found by partial matches. Don't bother with exact matches so we don't have to de-duplicate
statement, err := s.db.Prepare(`SELECT rowid,hash,kind FROM Hashes WHERE ` + strings.TrimSuffix(strings.Repeat("(hash=? AND kind=?) OR", len(hashes)), "OR") + `ORDER BY kind,hash;`)
if err != nil {
logTime("Fail exact")
return foundMatches, err
}
args := make([]interface{}, 0, len(hashes)*2)
for _, hash := range hashes {
if hash.Hash != 0 {
args = append(args, int64(hash.Hash), hash.Kind)
}
}
hashes, err := s.findExactHashes(statement, args...)
if err != nil {
return foundMatches, err
}
for _, hash := range hashes {
foundMatches = append(foundMatches, hash.Result)
}
// If we have exact matches don't bother with other matches
if len(foundMatches) > 0 && exactOnly {
return foundMatches, nil
}
logTime("Search Exact")
}
foundHashes := make(map[uint64]struct{})
for _, hash := range hashes {
hashes, err := s.findPartialHashes(max, int64(hash.Hash), hash.Kind)
if err != nil {
return foundMatches, err
}
logTime("Search partial " + hash.Kind.String())
for _, hash := range hashes {
if _, alreadyMatched := foundHashes[hash.Hash.Hash]; !alreadyMatched {
foundHashes[hash.Hash.Hash] = struct{}{}
foundMatches = append(foundMatches, hash.Result)
} else {
log.Println("Hash already found", hash)
}
}
}
return foundMatches, nil
}
func (s *sqliteStorage) MapHashes(hash ImageHash) {
tx, err := s.db.BeginTx(context.Background(), nil)
if err != nil {
panic(err)
}
insertHashes, err := tx.Prepare(`
INSERT INTO Hashes (hash,kind) VALUES (?,?) ON CONFLICT DO UPDATE SET hash=?1 RETURNING hashid
`)
if err != nil {
panic(err)
}
rows, err := tx.Query(`
INSERT INTO IDs (domain,id) VALUES (?,?) ON CONFLICT DO UPDATE SET domain=?1 RETURNING idid
`, hash.ID.Domain, hash.ID.ID)
if err != nil {
panic(err)
}
if !rows.Next() {
panic("Unable to insert IDs")
}
var id_id int64
err = rows.Scan(&id_id)
if err != nil {
panic(err)
}
rows.Close()
hash_ids := []int64{}
for _, hash := range hash.Hashes {
rows, err := insertHashes.Query(int64(hash.Hash), hash.Kind)
if err != nil {
panic(err)
}
if !rows.Next() {
panic("Unable to insert IDs")
}
var id int64
err = rows.Scan(&id)
rows.Close()
if err != nil {
panic(err)
}
hash_ids = append(hash_ids, id)
}
var ids []any
for _, hash_id := range hash_ids {
ids = append(ids, hash_id, id_id)
}
_, err = tx.Exec(`INSERT INTO id_hash (hashid,idid) VALUES `+strings.TrimSuffix(strings.Repeat("(?, ?),", len(hash_ids)), ",")+` ON CONFLICT DO NOTHING;`, ids...)
if err != nil {
panic(fmt.Errorf("Failed inserting: %v,%v: %w", hash.ID.Domain, hash.ID.ID, err))
}
err = tx.Commit()
if err != nil {
panic(err)
}
insertHashes.Close()
}
func (s *sqliteStorage) DecodeHashes(hashes SavedHashes) error {
err := s.dropIndexes()
if err != nil {
return err
}
for hashType, sourceHashes := range hashes.Hashes {
hashKind := goimagehash.Kind(hashType + 1)
for hash, idsLocations := range sourceHashes {
for _, id := range hashes.IDs[idsLocations] {
s.MapHashes(ImageHash{
Hashes: []Hash{{hash, hashKind}},
ID: id,
})
}
}
}
err = s.createIndexes()
if err != nil {
return err
}
return nil
}
func (s *sqliteStorage) EncodeHashes() (SavedHashes, error) {
hashes := SavedHashes{}
conn, err := s.db.Conn(context.Background())
if err != nil {
return hashes, err
}
defer conn.Close()
rows, err := conn.QueryContext(context.Background(), "SELECT IDs.domain,IDs.id,Hashes.hash,Hashes.kind FROM Hashes JOIN id_hash ON id_hash.hashid = hashes.rowid JOIN IDs ON IDs.rowid = id_hash.idid ORDER BY IDs.ID,Hashes.kind,Hashes.hash;")
if err != nil {
rows.Close()
return hashes, err
}
var (
id ID
hash Hash
)
err = rows.Scan(&id.Domain, &id.ID, &hash.Hash, &hash.Kind)
if err != nil {
return hashes, err
}
hashes.InsertHash(hash, id)
return hashes, nil
}
func (s *sqliteStorage) AssociateIDs(newIDs []NewIDs) {
for _, ids := range newIDs {
var oldIDID, newIDID int
_, err := s.db.Exec(`INSERT INTO IDs domain,id VALUES (?,?)`, ids.NewID.Domain, ids.NewID.ID)
if err != nil {
panic(err)
}
rows, err := s.db.Query(`SELECT idid FROM IDs WHERE domain=? AND id=?`, ids.NewID.Domain, ids.NewID.ID)
if err != nil && !errors.Is(err, sql.ErrNoRows) {
panic(err)
}
if rows.Next() {
rows.Scan(&newIDID)
} else {
panic("Unable to insert New ID into database")
}
rows.Close()
rows, err = s.db.Query(`SELECT idid FROM IDs WHERE domain=? AND id=?`, ids.OldID.Domain, ids.OldID.ID)
if err != nil && !errors.Is(err, sql.ErrNoRows) {
panic(err)
}
if rows.Next() {
rows.Scan(&oldIDID)
} else {
continue
}
_, err = s.db.Exec(`INSERT INTO id_hash (hashid, id_id) SELECT hashid,? FROM id_hash where id_id=?`, newIDID, oldIDID)
if err != nil {
panic(err)
}
}
}
func (s *sqliteStorage) GetIDs(id ID) IDList {
var idid int
rows, err := s.db.Query(`SELECT idid FROM IDs WHERE domain=? AND id=?`, id.Domain, id.ID)
if err != nil && !errors.Is(err, sql.ErrNoRows) {
panic(err)
}
if rows.Next() {
rows.Scan(&idid)
} else {
return nil
}
rows, err = s.db.Query(`SELECT id_hash FROM id_hash WHERE id_id=?`, idid)
if err != nil && !errors.Is(err, sql.ErrNoRows) {
panic(err)
}
var hashIDs []interface{}
for rows.Next() {
var hashID int
rows.Scan(&hashID)
hashIDs = append(hashIDs, hashID)
}
rows.Close()
IDs := make(IDList)
rows, err = s.db.Query(`SELECT IDs.domain,IDs.id FROM id_hash JOIN IDs ON id_hash.idid==IDs.idid WHERE hash_id in (`+strings.TrimRight(strings.Repeat("?,", len(hashIDs)), ",")+`)`, hashIDs...)
if err != nil && !errors.Is(err, sql.ErrNoRows) {
panic(err)
}
for rows.Next() {
var id ID
rows.Scan(&id.Domain, id.ID)
IDs[id.Domain] = append(IDs[id.Domain], id.ID)
}
return IDs
}
func NewSqliteStorage(db, path string) (HashStorage, error) {
sqlite := &sqliteStorage{}
sqlDB, err := sql.Open(db, fmt.Sprintf("file://%s?_pragma=cache_size(-200000)&_pragma=busy_timeout(500)&_pragma=hard_heap_limit(1073741824)&_pragma=journal_mode(wal)&_pragma=soft_heap_limit(314572800)", path))
if err != nil {
panic(err)
}
sqlite.db = sqlDB
_, err = sqlite.db.Exec(`
PRAGMA foreign_keys=ON;
CREATE TABLE IF NOT EXISTS Hashes(
hashid INTEGER PRIMARY KEY,
hash INT NOT NULL,
kind int NOT NULL,
UNIQUE(kind, hash)
);
CREATE TABLE IF NOT EXISTS IDs(
id TEXT NOT NULL,
domain TEXT NOT NULL,
idid INTEGER PRIMARY KEY,
UNIQUE (domain, id)
);
CREATE INDEX IF NOT EXISTS id_domain ON IDs (domain, id);
CREATE TABLE IF NOT EXISTS id_hash(
hashid INTEGER,
idid INTEGER,
FOREIGN KEY(hashid) REFERENCES Hashes(hashid),
FOREIGN KEY(idid) REFERENCES IDs(idid)
UNIQUE (hashid, idid)
);
`)
if err != nil {
panic(err)
}
sqlite.createIndexes()
sqlite.db.SetMaxOpenConns(1)
return sqlite, nil
}